| add_to_force(double force, int index, int coor) | ECM | inline |
| assign_key_value(string key, string value) | ECM | inline |
| Average_node_pair_length | ECM | private |
| check(void) | ECM | private |
| COM_position | ECM | private |
| COM_velocity | ECM | private |
| Dashpot_Viscosity | ECM | private |
| ECM() | ECM | inline |
| epsilon | ECM | private |
| epsilon_LJ_12_6 | ECM | private |
| export_for_resume(int MD_step) | ECM | |
| export_for_resume(int MD_step, MyAtomInfo atoms[], int atom_count) | ECM | |
| ext_force_model | ECM | private |
| file_time | ECM | private |
| get_avg_node_dist(void) | ECM | inline |
| get_epsilon(void) | ECM | inline |
| get_epsilon_LJ_12_6(void) | ECM | inline |
| get_ext_force_model(void) | ECM | inline |
| get_insertOrder() | ECM | inline |
| get_interaction_range(void) | ECM | inline |
| get_kx(void) | ECM | inline |
| get_ky(void) | ECM | inline |
| get_kz(void) | ECM | inline |
| get_label(void) | ECM | inline |
| get_map() | ECM | inline |
| get_node_mass(void) | ECM | inline |
| get_node_pair(int bond_num, int node_id) | ECM | inline |
| get_node_position(int node_number, int node_coordinate) | ECM | inline |
| get_node_radius(void) | ECM | inline |
| get_node_velocity(int node_number, int node_coordinate) | ECM | inline |
| get_num_of_node_pairs(void) | ECM | inline |
| get_num_of_nodes(void) | ECM | inline |
| get_num_of_triangles(void) | ECM | inline |
| get_receptor_center_x(void) | ECM | inline |
| get_receptor_center_y(void) | ECM | inline |
| get_receptor_center_z(void) | ECM | inline |
| get_receptor_density(void) | ECM | inline |
| get_receptor_gradient_x(void) | ECM | inline |
| get_receptor_gradient_y(void) | ECM | inline |
| get_receptor_gradient_z(void) | ECM | inline |
| get_receptor_type(void) | ECM | inline |
| get_sigma(void) | ECM | inline |
| get_sigma_LJ_12_6(void) | ECM | inline |
| get_spring_model(void) | ECM | inline |
| get_spring_stiffness_coefficient(void) | ECM | inline |
| get_stiffness_gradient_x(void) | ECM | inline |
| get_stiffness_gradient_y(void) | ECM | inline |
| get_stiffness_gradient_z(void) | ECM | inline |
| import_config(vector< string > configlines) | ECM | |
| index | ECM | private |
| initialise(int dimension) | ECM | private |
| insertOrder | ECM | |
| interaction_range | ECM | private |
| Kelvin_Damping_Coefficient | ECM | private |
| kx | ECM | private |
| ky | ECM | private |
| kz | ECM | private |
| label | ECM | private |
| Max_node_pair_length | ECM | private |
| Mesh_file_name | ECM | private |
| Min_node_pair_length | ECM | private |
| Node_Bond_identifier_2D(void) | ECM | private |
| Node_Bond_identifier_3D(void) | ECM | private |
| Node_Bond_identifier_3D_square(void) | ECM | private |
| Node_Bond_list | ECM | private |
| Node_Force | ECM | private |
| Node_Mass | ECM | private |
| Node_neighbour_list | ECM | private |
| Node_neighbour_list_constructor(void) | ECM | private |
| Node_Position | ECM | private |
| Node_radius | ECM | private |
| Node_Velocity | ECM | private |
| normal_direction_Identifier(double x, double y, double z) | ECM | private |
| normal_direction_Identifier(void) | ECM | private |
| Num_of_Node_Pairs | ECM | private |
| Num_of_Nodes | ECM | private |
| Num_of_Triangle_Pairs | ECM | private |
| Num_of_Triangles | ECM | private |
| output_file_neme | ECM | |
| param_map | ECM | private |
| Params | ECM | |
| Pyramid_Nodes | ECM | private |
| read_gmesh_file_2D(std::string gmesh_file) | ECM | private |
| read_gmesh_file_3D(std::string gmesh_file) | ECM | private |
| read_gmesh_file_3D_square(std::string gmesh_file) | ECM | private |
| receptor_center_x | ECM | private |
| receptor_center_y | ECM | private |
| receptor_center_z | ECM | private |
| receptor_density | ECM | private |
| receptor_gradient_x | ECM | private |
| receptor_gradient_y | ECM | private |
| receptor_gradient_z | ECM | private |
| receptor_type | ECM | private |
| rescale_factor | ECM | private |
| set_FENE_param(double &le0, double &le1, double &lmin, double &lmax) | ECM | inline |
| set_file_time(char *buffer) | ECM | inline |
| set_index(int ind) | ECM | inline |
| set_interaction_range(double range) | ECM | inline |
| set_label(std::string lab) | ECM | inline |
| set_state(MyAtomInfo all_atoms[], int atom_count) | ECM | |
| Shift_in_X_direction | ECM | private |
| Shift_in_Y_direction | ECM | private |
| Shift_in_Z_direction | ECM | private |
| shift_node_positions(void) | ECM | inline |
| shift_velocity(double vx, double vy, double vz) | ECM | inline |
| sigma | ECM | private |
| sigma_LJ_12_6 | ECM | private |
| Spring_coefficient | ECM | private |
| spring_model | ECM | private |
| square_Nodes | ECM | private |
| stiffness_gradient_x | ECM | private |
| stiffness_gradient_y | ECM | private |
| stiffness_gradient_z | ECM | private |
| Triangle_List | ECM | private |
| update_COM_position(void) | ECM | inline |
| update_COM_velocity(void) | ECM | inline |
| values | ECM | |
| x_speed | ECM | private |
| y_speed | ECM | private |
| z_speed | ECM | private |